Prof. Damien Thompson

Verma, V;Soto, R;Bhattacharya, S;Thompson, D;Ryan, KM;Padrela, L (2022) Thermodynamic solubility of celecoxib in organic solvents. CAMBRIDGE : ROYAL SOC CHEMISTRY Crystengcomm :698-710

Dully, M;Bhattacharya, S;Verma, V;Murray, D;Thompson, D;Soulimane, T;Hudson, SP (2022) Balanced lipase interactions for degradation-controlled paclitaxel release from lipid cubic phase formulations. SAN DIEGO : ACADEMIC PRESS INC ELSEVIER SCIENCE Journal of colloid and interface science :978-991

Gamero-Quijano, Alonso; Bhattacharya, Shayon; Cazade, Pierre-André; Molina-Osorio, Andrés F.; Beecher, Cillian; Djeghader, Ahmed; Soulimane, Tewfik; Dossot, Manuel; Thompson, Damien; Herzog, Grégoire and Scanlon, Micheál D. (2021) Modulating the pro-apoptotic activity of cytochrome c at a biomimetic electrified interface. Science Advances :eabg4119-

Zhang, ZY;Cao, L;Chen, X;Thompson, D;Qi, DC;Nijhuis, CA (2021) Energy-Level Alignment and Orbital-Selective Femtosecond Charge Transfer Dynamics of Redox-Active Molecules on Au, Ag, and Pt Metal Surfaces. WASHINGTON : AMER CHEMICAL SOC Journal Of Physical Chemistry C :18474-18482

Shaikh, R.;Shirazian, S.;Guerin, S.;Sheehan, E.;Thompson, D.;Walker, G.M.;Croker, D.M.; (2021) Understanding solid-state processing of pharmaceutical cocrystals via milling: Role of tablet excipients. International journal of pharmaceutics

Shaikh R;Shirazian S;Guerin S;Sheehan E;Thompson D;Walker GM;Croker DM; (2021) Understanding solid-state processing of pharmaceutical cocrystals via milling: Role of tablet excipients.. International journal of pharmaceutics

Guerin S;Thompson D; (2021) Restriction boosts piezoelectricity.. Nature materials

Ji, W.;Xue, B.;Bera, S.;Guerin, S.;Shimon, L.J.W.;Ma, Q.;Tofail, S.A.M.;Thompson, D.;Cao, Y.;Wang, W.;Gazit, E.; (2021) Modulation of physical properties of organic cocrystals by amino acid chirality. Materials Today

Donnell, JO;Cazade, PA;Guerin, S;Djeghader, A;Haq, EU;Tao, K;Gazit, E;Fukada, E;Silien, C;Soulimane, T;Thompson, D;Tofail, SAM (2021) Piezoelectricity of the Transmembrane Protein ba(3) Cytochrome c Oxidase. WEINHEIM : WILEY-V C H VERLAG GMBH Advanced Functional Materials

Guerin, S;Khorasani, S;Gleeson, M;O'Donnell, J;Sanii, R;Zwane, R;Reilly, AM;Silien, C;Tofail, SAM;Liu, N;Zaworotko, M;Thompson, D (2021) A Piezoelectric Ionic Cocrystal of Glycine and Sulfamic Acid. WASHINGTON : AMER CHEMICAL SOC Crystal Growth & Design :5818-5827

O'Donnell, J;Ul Haq, E;Silien, C;Soulimane, T;Thompson, D;Tofail, SAM (2021) A practical approach for standardization of converse piezoelectric constants obtained from piezoresponse force microscopy. MELVILLE : AIP Publishing Journal Of Applied Physics

Thodkar K;Cazade PA;Bergmann F;Lopez-Calle E;Thompson D;Heindl D; (2021) Self-Assembled Pyrene Stacks and Peptide Monolayers Tune the Electronic Properties of Functionalized Electrolyte-Gated Graphene Field-Effect Transistors.. ACS Applied Materials & Interfaces

Cazade P.A.;Verma V.;Hodnett B.K.;Thompson D. (2021) Extended Lifetime of Molecules Adsorbed onto Excipients Drives Nucleation in Heterogeneous Crystallization. Crystal Growth & Design

Goswami, S;Pramanick, R;Patra, A;Rath, SP;Foltin, M;Ariando, A;Thompson, D;Venkatesan, T;Goswami, S;Williams, RS (2021) Decision trees within a molecular memristor. BERLIN : NATURE PORTFOLIO Nature :51-

Chen, XP;Kretz, B;Adoah, F;Nickle, C;Chi, X;Yu, XJ;del Barco, E;Thompson, D;Egger, DA;Nijhuis, CA (2021) A single atom change turns insulating saturated wires into molecular conductors. BERLIN : NATURE RESEARCH Nature Communications

Bhattacharya S.;Xu L.;Thompson D. (2020) Long-range Regulation of Partially Folded Amyloidogenic Peptides. Scientific Reports

Nirmalraj P.N.;List J.;Battacharya S.;Howe G.;Xu L.;Thompson D.;Mayer M. (2020) Complete aggregation pathway of amyloid β (1-40) and (1-42) resolved on an atomically clean interface. Science Advances

Goswami S.;Rath S.P.;Thompson D.;Hedström S.;Annamalai M.;Pramanick R.;Ilic B.R.;Sarkar S.;Hooda S.;Nijhuis C.A.;Martin J.;Williams R.S.;Goswami S.;Venkatesan T. (2020) Charge disproportionate molecular redox for discrete memristive and memcapacitive switching. Nature nanotechnology

Damien Thompson;Enrique del Barco;Christian A. Nijhuis; (2020) Design principles of dual-functional molecular switches in solid-state tunnel junctions. Applied Physics Letters

Pramod Patil Kunturu;Özlem Kap;Kai Sotthewes;Pierre Cazade;Harold J. W. Zandvliet;Damien Thompson;Ofer Reany;Jurriaan Huskens; (2020) Anchoring and packing of self-assembled monolayers of semithio-bambusurils on Au(111). Molecular Systems Design And Engineering

Gleeson M;O'Dwyer K;Guerin S;Rice D;Thompson D;Tofail SAM;Silien C;Liu N; (2020) Quantitative Polarization-Resolved Second-Harmonic-Generation Microscopy of Glycine Microneedles.. Advanced Materials

Kunturu P.P.;Kap Ö.;Sotthewes K.;Cazade P.;Zandvliet H.J.W.;Thompson D.;Reany O.;Huskens J. (2020) Anchoring and packing of self-assembled monolayers of: Semithio-bambusurils on Au(111). Molecular Systems Design And Engineering :511-520

O'Donnell, J.;Sarkar, S.M.;Guerin, S.;Borda, G.G.;Silien, C.;Soulimane, T.;Thompson, D.;O'Reilly, E.;Tofail, S.A.M.; (2020) Piezoelectricity in the proteinogenic amino acid L-leucine: A novel piezoactive bioelectret. Ieee Transactions On Dielectrics And Electrical Insulation

O'Donnell J.;Guerin S.;Makam P.;Cazade P.A.;Haq E.U.;Tao K.;Gazit E.;Silien C.;Soulimane T.;Thompson D.;Tofail S.A.M. (2020) Atomistic-Benchmarking towards a protocol development for rapid quantitative metrology of piezoelectric biomolecular materials. Applied Materials Today

Han Y.;Nickle C.;Zhang Z.;Astier H.P.A.G.;Duffin T.J.;Qi D.;Wang Z.;del Barco E.;Thompson D.;Nijhuis C.A. (2020) Electric-field-driven dual-functional molecular switches in tunnel junctions. Nature materials

Goswami S.;Thompson D.;Williams R.S.;Goswami S.;Venkatesan T. (2020) Colossal current and voltage tunability in an organic memristor via electrode engineering. Applied Materials Today

Ji W.;Xue B.;Bera S.;Guerin S.;Liu Y.;Yuan H.;Li Q.;Yuan C.;Shimon L.J.W.;Ma Q.;Kiely E.;Tofail S.A.M.;Si M.;Yan X.;Cao Y.;Wang W.;Yang R.;Thompson D.;Li J.;Gazit E. (2020) Tunable Mechanical and Optoelectronic Properties of Organic Cocrystals by Unexpected Stacking Transformation from H- to J- and X-Aggregation. Acs Nano :10704-10715

Kai Tao;Joseph O’ Donnell;Hui Yuan;Ehtsham. U. Haq;Sarah Guerin;Linda J. W. Shimon;Bin Xue;Christophe Silien;Yi Cao;Damien Thompson;Rusen Yang;Syed A. M. Tofail;Ehud Gazit; (2020) Accelerated charge transfer in water-layered peptide assemblies. Energy & Environmental Science

Basavalingappa V.;Bera S.;Xue B.;O'Donnell J.;Guerin S.;Cazade P.A.;Yuan H.;Haq E.U.;Silien C.;Tao K.;Shimon L.J.W.;Tofail S.A.M.;Thompson D.;Kolusheva S.;Yang R.;Cao Y.;Gazit E. (2020) Diphenylalanine-Derivative Peptide Assemblies with Increased Aromaticity Exhibit Metal-like Rigidity and High Piezoelectricity. Acs Nano :7025-7037

Tao K.;Donnell J.;Yuan H.;Haq E.;Guerin S.;Shimon L.;Xue B.;Silien C.;Cao Y.;Thompson D.;Yang R.;Tofail S.;Gazit E. (2020) Accelerated charge transfer in water-layered peptide assemblies. Energy & Environmental Science :96-101

Tao K.;Hu W.;Xue B.;Chovan D.;Brown N.;Shimon L.;Maraba O.;Cao Y.;Tofail S.;Thompson D.;Li J.;Yang R.;Gazit E. (2019) Bioinspired Stable and Photoluminescent Assemblies for Power Generation. Journal Of Advanced Materials

Liang Cao;Li Yuan;Ming Yang;Nisachol Nerngchamnong;Damien Thompson;Xiaojiang Yu;Dong-Chen Qi;Christian A. Nijhuis; (2019) The supramolecular structure and van der Waals interactions affect the electronic structure of ferrocenyl-alkanethiolate SAMs on gold and silver electrodes. Nanoscale Advances

Guerin, S.;O'Donnell, J.;Haq, E.U.;McKeown, C.;Silien, C.;Rhen, F.M.F.;Soulimane, T.;Tofail, S.A.M.;Thompson, D.; (2019) Racemic Amino Acid Piezoelectric Transducer. Physical Review Letters

Cao L.;Yuan L.;Yang M.;Nerngchamnong N.;Thompson D.;Yu X.;Qi D.;Nijhuis C. (2019) The supramolecular structure and van der Waals interactions affect the electronic structure of ferrocenyl-alkanethiolate SAMs on gold and silver electrodes. Nanoscale Advances :1991-2002

Aono, M.;Baeumer, C.;Bartlett, P.;Brivio, S.;Burr, G.;Burriel, M.;Carlos, E.;Deswal, S.;Deuermeier, J.;Dittmann, R.;Du, H.;Gale, E.;Hambsch, S.;Hilgenkamp, H.;Ielmini, D.;Kenyon, A.J.;Kiazadeh, A.;Kindsmüller, A.;Kissling, G.;Köymen, I.;Menzel, S.;Pla Asesio, D.;Prodromakis, T.;Santamaria, M.;Shluger, A.;Thompson, D.;Valov, I.;Wang, W.;Waser, R.;Williams, R.S.;Wrana, D.;Wouters, D.;Yang, Y.;Zaffora, A.; (2019) Valence change ReRAMs (VCM) - Experiments and modelling: General discussion. Faraday Discussions

Singh R.;Hidalgo T.;Cazade P.;Darcy R.;Cronin M.;Dorin I.;O'Driscoll C.;Thompson D. (2019) Self-Assembled Cationic β-Cyclodextrin Nanostructures for siRNA Delivery. Molecular Pharmaceutics

Bhattacharya S.;Xu L.;Thompson D. (2019) Molecular simulations reveal terminal group mediated stabilization of helical conformers in both amyloid-β42 and α-synuclein. Acs Chemical Neuroscience

Bartlett, P.;Berg, A.I.;Bernasconi, M.;Brown, S.;Burr, G.;Foroutan-Nejad, C.;Gale, E.;Huang, R.;Ielmini, D.;Kissling, G.;Kolosov, V.;Kozicki, M.;Nakamura, H.;Rushchanskii, K.;Salinga, M.;Shluger, A.;Thompson, D.;Valov, I.;Wang, W.;Waser, R.;Williams, R.S.; (2019) Phase-change memories (PCM)-Experiments and modelling: General discussion. Faraday Discussions

Duffin T.;Nerngchamnong N.;Thompson D.;Nijhuis C. (2019) Direct measurement of the local field within alkyl-ferrocenyl-alkanethiolate monolayers: Importance of the supramolecular and electronic structure on the voltammetric response and potential profile. Electrochimica Acta :92-102

Suárez-Herrera, Marco F.; Cazade, Pierre-André; Thompson, Damien and Scanlon, Micheál D. (2019) Monitoring transient changes in the structure of water at a polarised liquid-liquid interface using electrocapillary curves. Electrochemistry Communications :106564-

Liang Xu;Shayon Bhattacharya;Damien Thompson; (2019) On the ubiquity of helical α-synuclein tetramers. Physical Chemistry Chemical Physics

Bhattacharya, Shayon and Xu, Liang and Thompson, Damien (2019) Molecular simulations reveal terminal group mediated stabilization of helical conformers in both amyloid-$beta$42 and $alpha$-synuclein. ACS chemical neuroscience :2830-2842

Zeglinski J.;Kuhs M.;Devi K.;Khamar D.;Hegarty A.;Thompson D.;Rasmuson Å. (2019) Probing Crystal Nucleation of Fenoxycarb from Solution through the Effect of Solvent. Crystal Growth & Design

Guerin, S.;Tofail, S.A.M.;Thompson, D.; (2019) Organic piezoelectric materials: milestones and potential. Npg Asia Materials

Guerin, S;O'Donnell, J;Haq, EU;McKeown, C;Silien, C;Rhen, FMF;Soulimane, T;Tofail, SAM;Thompson, D (2019) Racemic Amino Acid Piezoelectric Transducer. COLLEGE PK : AMER PHYSICAL SOC Physical Review Letters

Guerin, S.;Tofail, S.A.M.;Thompson, D.; (2019) Organic piezoelectric materials: milestones and potential. Npg Asia Materials

Nirmalraj, P;Lehner, R;Thompson, D;Rothen-Rutishauser, B;Mayer, M (2018) Subcellular Imaging of Liquid Silicone Coated-Intestinal Epithelial Cells. LONDON : NATURE PUBLISHING GROUP Scientific Reports

Liang Xu;Shayon Bhattacharya;Damien Thompson; (2018) Re-designing the α-synuclein tetramer. Chemical Communications

Xu, L;Bhattacharya, S;Thompson, D (2018) Re-designing the alpha-synuclein tetramer. CAMBRIDGE : ROYAL SOC CHEMISTRY Chemical Communications :8080-8083

Guerin, S.;Tofail, S.A.M.;Thompson, D.; (2018) Longitudinal piezoelectricity in natural calcite materials: Preliminary studies. Ieee Transactions On Dielectrics And Electrical Insulation

Melissabye Gunnoo;Pierre-André Cazade;Adam Orlowski;Mateusz Chwastyk;Haipei Liu;Duy Tien Ta;Marek Cieplak;Michael Nash;Damien Thompson; (2018) Steered molecular dynamics simulations reveal the role of Ca2+ in regulating mechanostability of cellulose-binding proteins. Physical Chemistry Chemical Physics

Sotthewes, K;Kap, O;Wu, HR;Thompson, D;Huskens, J;Zandvliet, HJW (2018) Ordering of Air-Oxidized Decanethiols on Au(111). WASHINGTON : AMER CHEMICAL SOC Journal Of Physical Chemistry C :8430-8436

Song, P,Guerin, S,Tan, SJR,Annadata, HV,Yu, XJ,Scully, M,Han, YM,Roemer, M,Loh, KP,Thompson, D,Nijhuis, CA (2018) Stable Molecular Diodes Based on pi-pi Interactions of the Molecular Frontier Orbitals with Graphene Electrodes. Advanced Materials

Melissabye Gunnoo;Pierre-André Cazade;Edward A. Bayer;Damien Thompson; (2018) Molecular simulations reveal that a short helical loop regulates thermal stability of type I cohesinâ€'dockerin complexes. Physical Chemistry Chemical Physics

Guerin S.;Tofail S.;Thompson D. (2018) Longitudinal piezoelectricity in natural calcite materials: Preliminary studies. Ieee Transactions On Dielectrics And Electrical Insulation :803-807

Orlowski, A,Artzi, L,Cazade, PA,Gunnoo, M,Bayer, EA,Thompson, D (2018) On the distinct binding modes of expansin and carbohydrate-binding module proteins on crystalline and nanofibrous cellulose: implications for cellulose degradation by designer cellulosomes. Physical chemistry chemical physics : PCCP :8278-8293

Adam Orłowski;Lior Artzi;Pierre-Andre Cazade;Melissabye Gunnoo;Edward A. Bayer;Damien Thompson; (2018) On the distinct binding modes of expansin and carbohydrate-binding module proteins on crystalline and nanofibrous cellulose: implications for cellulose degradation by designer cellulosomes. Physical Chemistry Chemical Physics

Dorival J.;Ruppert S.;Gunnoo M.;Orłowski A.;Chapelais-Baron M.;Dabin J.;Labourel A.;Thompson D.;Michel G.;Czjzek M.;Genicot S. (2018) The laterally acquired GH5 ZgEngA<inf>GH5_4</inf> from the marine bacterium Zobellia galactanivorans is dedicated to hemicellulose hydrolysis. Biochemical Journal :3609-3628

Nirmalraj, P.N.;Thodkar, K.;Guerin, S.;Calame, M.;Thompson, D.; (2018) Graphene wrinkle effects on molecular resonance states. Npj 2d Materials And Applications

Xu, L,Bhattacharya, S,Thompson, D (2018) The fold preference and thermodynamic stability of alpha-synuclein fibrils is encoded in the non-amyloid-beta component region. Physical chemistry chemical physics : PCCP :4502-4512

Xu, Liang and Bhattacharya, Shayon and Thompson, Damien (2018) The fold preference and thermodynamic stability of $alpha$-synuclein fibrils is encoded in the non-amyloid-$beta$ component region. Physical Chemistry Chemical Physics :4502-4512

Sarah Guerin;Tofail A. M. Syed;Damien Thompson; (2018) Deconstructing collagen piezoelectricity using alanine-hydroxyproline-glycine building blocks. Nanoscale

Nirmalraj, PN,Thodkar, K,Guerin, S,Calame, M,Thompson, D (2018) Graphene wrinkle effects on molecular resonance states. Npj 2d Materials And Applications

Gunnoo, M;Cazade, PA;Bayer, EA;Thompson, D (2018) Molecular simulations reveal that a short helical loop regulates thermal stability of type I cohesin-dockerin complexes. CAMBRIDGE : ROYAL SOC CHEMISTRY Physical Chemistry Chemical Physics :28445-28451

Xu, Liang and Bhattacharya, Shayon and Thompson, Damien (2018) Re-designing the $alpha$-synuclein tetramer. Chemical communications :8080-8083

Guerin, S;Syed, TAM;Thompson, D (2018) Deconstructing collagen piezoelectricity using alanine-hydroxyproline-glycine building blocks. CAMBRIDGE : ROYAL SOC CHEMISTRY Nanoscale :9653-9663

Shayon Bhattacharya;Liang Xu;Damien Thompson; (2018) Revisiting the earliest signatures of amyloidogenesis: Roadmaps emerging from computational modeling and experiment. Wiley Interdisciplinary Reviews: Computational Molecular Science

Gunnoo, M;Cazade, PA;Orlowski, A;Chwastyk, M;Liu, H;Ta, DT;Cieplak, M;Nash, M;Thompson, D (2018) Steered molecular dynamics simulations reveal the role of Ca2+ in regulating mechanostability of cellulose-binding proteins. CAMBRIDGE : ROYAL SOC CHEMISTRY Physical Chemistry Chemical Physics :22674-22680

Guerin, S,Stapleton, A,Chovan, D,Mouras, R,Gleeson, M,McKeown, C,Noor, MR,Silien, C,Rhen, FMF,Kholkin, AL,Liu, N,Soulimane, T,Tofail, SAM,Thompson, D (2018) Control of piezoelectricity in amino acids by supramolecular packing. Nature materials :180-

Song, P.;Guerin, S.;Tan, S.J.R.;Annadata, H.V.;Yu, X.;Scully, M.;Han, Y.M.;Roemer, M.;Loh, K.P.;Thompson, D.;Nijhuis, C.A.; (2018) Stable Molecular Diodes Based on πâ€'π Interactions of the Molecular Frontier Orbitals with Graphene Electrodes. Journal Of Advanced Materials

Bhattacharya, Shayon and Xu, Liang and Thompson, Damien (2018) Revisiting the earliest signatures of amyloidogenesis: Roadmaps emerging from computational modeling and experiment. Wiley Interdisciplinary Reviews: Computational Molecular Science :e1359-

Guerin, S;Tofail, SAM;Thompson, D (2018) Longitudinal Piezoelectricity in Orthorhombic Amino Acid Crystal Films. WASHINGTON : AMER CHEMICAL SOC Crystal Growth & Design :4844-4848

Guerin, S.;Stapleton, A.;Chovan, D.;Tofail, S. A.;Thompson, D.; (2017) First Principles Design of Organic Piezoelectric Devices. European Biophysics Journal With Biophysics Letters

Wasserberg, D,Cabanas-Danes, J,Prangsma, J,O'Mahony, S,Cazade, PA,Tromp, E,Blum, C,Thompson, D,Huskens, J,Subramaniam, V,Jonkheijm, P (2017) Controlling Protein Surface Orientation by Strategic Placement of Oligo-Histidine Tags. Acs Nano :9068-9083

Bhattacharya, S.;Dominguez, J. L.;Xu, L.;Thompson, D.; (2017) Characterization of monomers of amyloidogenesis by computer simulations: benchmarking methods. European Biophysics Journal With Biophysics Letters

Song, P.;Thompson, D.;Annadata, H.V.;Guerin, S.;Loh, K.P.;Nijhuis, C.A.; (2017) Supramolecular Structure of the Monolayer Triggers Odd-Even Effects in the Tunneling Rates across Noncovalent Junctions on Graphene. Journal Of Physical Chemistry C

Chen X.;Roemer M.;Yuan L.;Du W.;Thompson D.;Del Barco E.;Nijhuis C. (2017) Molecular diodes with rectification ratios exceeding 10⁵ driven by electrostatic interactions. Nature nanotechnology :797-803

Chen, XP,Roemer, M,Yuan, L,Du, W,Thompson, D,del Barco, E,Nijhuis, CA (2017) Molecular diodes with rectification ratios exceeding 10(5) driven by electrostatic interactions. Nature nanotechnology :797-803

Song, P,Thompson, D,Annadata, HV,Guerin, S,Loh, KP,Nijhuis, CA (2017) Supramolecular Structure of the Monolayer Triggers Odd-Even Effects in the Tunneling Rates across Noncovalent Junctions on Graphene. Journal Of Physical Chemistry C :4172-4180

Xu, L,Ma, B,Nussinoy, R,Thompson, D (2017) Familial Mutations May Switch Conformational Preferences in alpha-Synuclein Fibrils. Acs Chemical Neuroscience :837-849

Rozycki, B,Cazade, PA,O'Mahony, S,Thompson, D,Cieplak, M (2017) The length but not the sequence of peptide linker modules exerts the primary influence on the conformations of protein domains in cellulosome multi-enzyme complexes. Physical chemistry chemical physics : PCCP :21414-21425

Chwastyk, M,Vera, AM,Galera-Prat, A,Gunnoo, M,Thompson, D,Carrion-Vazquez, M,Cieplak, M (2017) Non-local effects of point mutations on the stability of a protein module. Journal Of Chemical Physics

Thodkar, K,Thompson, D,Luond, F,Moser, L,Ovemey, F,Marot, L,Schonenberger, C,Jeanneret, B,Calame, M (2017) Restoring the Electrical Properties of CVD Graphene via Physisorption of Molecular Adsorbates. ACS Applied Materials & Interfaces :25014-25022

Nirmalraj, P,Daly, R,Martin, N,Thompson, D (2017) Motion of Fullerenes around Topological Defects on Metals: Implications for the Progress of Molecular Scale Devices. ACS Applied Materials & Interfaces :7897-7902

Thompson D.;Nijhuis C. (2016) Even the Odd Numbers Help: Failure Modes of SAM-Based Tunnel Junctions Probed via Odd-Even Effects Revealed in Synchrotrons and Supercomputers. Accounts Of Chemical Research :2061-2069

Nirmalraj, P,La Rosa, A,Thompson, D,Sousa, M,Martin, N,Gotsmann, B,Riel, H (2016) Fingerprinting Electronic Molecular Complexes in Liquid. Scientific Reports

Song, P,Sangeeth, CSS,Thompson, D,Du, W,Loh, KP,Nijhuis, CA (2016) Noncovalent Self-Assembled Monolayers on Graphene as a Highly Stable Platform for Molecular Tunnel Junctions. Advanced Materials :631-639

Gunnoo, M.;Cazade, P.-A.;Galera-Prat, A.;Nash, M.A.;Czjzek, M.;Cieplak, M.;Alvarez, B.;Aguilar, M.;Karpol, A.;Gaub, H.;Carrión-Vázquez, M.;Bayer, E.A.;Thompson, D.; (2016) Nanoscale Engineering of Designer Cellulosomes. Journal Of Advanced Materials

Nirmalraj, P,Thompson, D,Dimitrakopoulos, C,Gotsmann, B,Dumcenco, D,Kis, A,Riel, H (2016) A robust molecular probe for Angstrom-scale analytics in liquids. Nature Communications

Yuan, L,Nerngchamnong, N,Cao, L,Hamoudi, H,del Barco, E,Roemer, M,Sriramula, RK,Thompson, D,Nijhuis, CA (2015) Controlling the direction of rectification in a molecular diode. Nature Communications

Nirmalraj, PN,Thompson, D,Riel, HE (2015) Capturing the embryonic stages of self-assembly - design rules for molecular computation. Scientific Reports

Sheikh, S,Blaszykowski, C,Nolan, R,Thompson, D,Thompson, M (2015) On the hydration of subnanometric antifouling organosilane adlayers: A molecular dynamics simulation. Journal of colloid and interface science :197-204

Jarvis, SP,Taylor, S,Baran, JD,Thompson, D,Saywell, A,Mangham, B,Champness, NR,Larsson, JK,Moriarty, P (2015) Physisorption Controls the Conformation and Density of States of an Adsorbed Porphyrin. Journal Of Physical Chemistry C :27982-27994

Nawrocki, G,Cazade, PA,Thompson, D,Cieplak, M (2015) Peptide Recognition Capabilities of Cellulose in Molecular Dynamics Simulations. Journal Of Physical Chemistry C :24404-24416

Nerngchamnong, N,Thompson, D,Cao, L,Yuan, L,Jiang, L,Roemer, M,Nijhuis, CA (2015) Nonideal Electrochemical Behavior of Ferrocenyl-Alkanethiolate SAMs Maps the Microenvironment of the Redox Unit. Journal Of Physical Chemistry C :21978-21991

Thompson, D,Liao, JH,Nolan, M,Quinn, AJ,Nijhuis, CA,O'Dwyer, C,Nirmalraj, PN,Schonenberger, C,Calame, M (2015) Formation Mechanism of Metal-Molecule-Metal Junctions: Molecule-Assisted Migration on Metal Defects. Journal Of Physical Chemistry C :19438-19451

Jiang, L,Sangeeth, CSS,Yuan, L,Thompson, D,Nijhuis, CA (2015) One-Nanometer Thin Mono layers Remove the Deleterious Effect of Substrate Defects in Molecular Tunnel Junctions. Nano Letters :6643-6649

Yuan, L,Thompson, D,Cao, L,Nerngchangnong, N,Nijhuis, CA (2015) One Carbon Matters: The Origin and Reversal of Odd-Even Effects in Molecular Diodes with Self-Assembled Monolayers of Ferrocenyl-Alkanethiolates. Journal Of Physical Chemistry C :17910-17919

Zeglinski, J,Nolan, M,Thompson, D,Tofail, SAM (2014) Reassigning the most stable surface of hydroxyapatite to the water resistant hydroxyl terminated (010) surface. Surface Science :55-63

Zeglinski, Jacek,Nolan, Michael,Thompson, Damien,Tofail, Syed A.M. (2014) Reassigning the most stable surface of hydroxyapatite to the water resistant hydroxyl terminated (010) surface. Surface Science :55-63

Sheikh S, Blaszykowski C, Nolan R, Thompson D, Thompson M (2014) On the hydration of subnanometric antifouling organosilane adlayers: A molecular dynamics simulation.. Journal of colloid and interface science :197-204

Nirmalraj, P,Thompson, D,Molina-Ontoria, A,Sousa, M,Martin, N,Gotsmann, B,Riel, H (2014) Nanoelectrical analysis of single molecules and atomic-scale materials at the solid/liquid interface. Nature materials :947-953

Yuan, L,Jiang, L,Thompson, D,Nijhuis, CA (2014) On the Remarkable Role of Surface Topography of the Bottom Electrodes in Blocking Leakage Currents in Molecular Diodes. Journal of the American Chemical Society :6554-6557

Nirmalraj P, Thompson D, Molina-Ontoria A, Sousa M, Martín N, Gotsmann B, Riel H (2014) Nanoelectrical analysis of single molecules and atomic-scale materials at the solid/liquid interface.. Nature materials :947-953

Yuan L, Jiang L, Thompson D, Nijhuis CA (2014) On the remarkable role of surface topography of the bottom electrodes in blocking leakage currents in molecular diodes.. Journal of the American Chemical Society :6554-6557

Wojciechowski, M,Thompson, D,Cieplak, M (2014) Mechanostability of cohesin-dockerin complexes in a structure-based model: Anisotropy and lack of universality in the force profiles. Journal Of Chemical Physics

Nerngchamnong, Nisachol;Yuan, Li;Qi, Dong-Chen;Li, Jiang;Thompson, Damien;Nijhuis, Christian A.; (2013) The role of van der Waals forces in the performance of molecular diodes. Nature nanotechnology

O'Mahony S, O'Dwyer C, Nijhuis CA, Greer JC, Quinn AJ, Thompson D (2013) Nanoscale dynamics and protein adhesivity of alkylamine self-assembled monolayers on graphene.. Langmuir :7271-7282

Glynn, C,Thompson, D,Paez, J,Collins, G,Benavente, E,Lavayen, V,Yutronic, N,Holmes, JD,Gonzalez, G,O'Dwyer, C (2013) Large directional conductivity change in chemically stable layered thin films of vanadium oxide and a 1D metal complex. Journal Of Materials Chemistry C :5675-5684

Nerngchamnong N, Yuan L, Qi DC, Li J, Thompson D, Nijhuis CA (2013) The role of van der Waals forces in the performance of molecular diodes.. Nature nanotechnology :113-118

Thompson D, Sikora M, Szymczak P, Cieplak M (2013) A multi-scale molecular dynamics study of the assembly of micron-size supraparticles from 30 nm alkyl-coated nanoparticles.. Physical chemistry chemical physics : PCCP :8132-8143

Thompson D, Hermes JP, Quinn AJ, Mayor M (2012) Scanning the potential energy surface for synthesis of dendrimer-wrapped gold clusters: design rules for true single-molecule nanostructures.. Acs Nano :3007-3017

O’Dwyer, C.,Gannon, G.,McNulty, D.,Buckley, D. N.,Thompson, D. (2012) Accommodating Curvature in a Highly Ordered Functionalized Metal Oxide Nanofiber: Synthesis, Characterization, and Multiscale Modeling of Layered Nanosheets. : American Chemical Society Chemistry of Materials :3981-3992

Long, Brenda and Manning, Mary and Burke, Micheal and Szafranek, Bartholomaeus N. and Visimberga, Giuseppe and Thompson, Damien and Greer, James C. and Povey, Ian M. and MacHale, John and Lejosne, Guaylord and Neumaier, Daniel and Quinn, Aidan J. (2012) Non-Covalent Functionalization of Graphene Using Self-Assembly of Alkane-Amines. Advanced Functional Materials :717-725

Hermes JP, Sander F, Fluch U, Peterle T, Thompson D, Urbani R, Pfohl T, Mayor M (2012) Monofunctionalized gold nanoparticles stabilized by a single dendrimer form dumbbell structures upon homocoupling.. Journal of the American Chemical Society :14674-14677

Galvin P, Thompson D, Ryan KB, McCarthy A, Moore AC, Burke CS, Dyson M, Maccraith BD, Gun'ko YK, Byrne MT, Volkov Y, Keely C, Keehan E, Howe M, Duffy C, MacLoughlin R (2012) Nanoparticle-based drug delivery: case studies for cancer and cardiovascular applications.. Cellular and molecular life sciences : CMLS :389-404

O'Dwyer C.;Gannon G.;McNulty D.;Buckley D.;Thompson D. (2012) Accommodating curvature in a highly ordered functionalized metal oxide nanofiber: Synthesis, characterization, and multiscale modeling of layered nanosheets. Chemistry Of Materials :3981-3992

Sikora M, Szymczak P, Thompson D, Cieplak M (2011) Linker-mediated assembly of gold nanoparticles into multimeric motifs.. Nanotechnology

Gannon, G; O'Dwyer, C; Larsson, JA; Thompson, D (2011) Interdigitating Organic Bilayers Direct the Short Inter layer Spacing in Hybrid Organic-Inorganic Layered Vanadium Oxide Nanostructures. Journal Of Physical Chemistry B :14518-14525

Hermes JP, Sander F, Peterle T, Urbani R, Pfohl T, Thompson D, Mayor M (2011) Gold nanoparticles stabilized by thioether dendrimers.. Chemistry (Weinheim an der Bergstrasse, Germany) :13473-13481

Perl A, Gomez-Casado A, Thompson D, Dam HH, Jonkheijm P, Reinhoudt DN, Huskens J (2011) Gradient-driven motion of multivalent ligand molecules along a surface functionalized with multiple receptors.. Nature chemistry :317-322

Thompson D, Coleman S, Diamond D, Byrne R (2011) Electronic structure calculations and physicochemical experiments quantify the competitive liquid ion association and probe stabilisation effects for nitrobenzospiropyran in phosphonium-based ionic liquids.. Physical chemistry chemical physics : PCCP :6156-6168

Moldovan C, Thompson D (2011) Molecular dynamics of the "hydrophobic patch" that immobilizes hydrophobin protein HFBII on silicon.. Journal of molecular modeling :2227-2235

Gannon G, Greer JC, Larsson JA, Thompson D (2010) Molecular dynamics study of naturally occurring defects in self-assembled monolayer formation.. Acs Nano :921-932

F Kivlehan, M Lefoix, HA Moynihan, D Thompson, VI Ogurtsov, G Herzog, DWM Arrigan (2010) Interaction of acridine-calix [4] arene with DNA at the electrified liquid| liquid interface. Electrochimica Acta :3348-

Aleksandrov A, Thompson D, Simonson T (2010) Alchemical free energy simulations for biological complexes: powerful but temperamental..... Journal of molecular recognition : JMR :117-127

Gannon, Greg,Larsson, J. Andreas,Thompson, Damien (2009) Monolayer Packing, Dehydration, and Ink-Binding Dynamics at the Molecular Printboard. : American Chemical Society The Journal of Physical Chemistry C :7298-7304

Gannon G, Larsson JA, Greer JC, Thompson D (2009) Quantification of ink diffusion in microcontact printing with self-assembled monolayers.. Langmuir :242-247

Gannon, Greg;Larsson, J. Andreas;Thompson, Damien; (2009) Monolayer Packing, Dehydration, and Ink-Binding Dynamics at the Molecular Printboard. Journal Of Physical Chemistry C

Miller, Charlotte;Thompson, Damien;McCarthy, Florence O.; (2009) DESIGN & SYNTHESIS OF NOVEL ELLIPTICINE C-KIT KINASE INHIBITORS. Drugs Of The Future

Simonson, Thomas;Thompson, Damien;Lopes, Anne; (2009) Engineering enzyme:substrate specificity: From free energy simulations to computational protein design. Abstracts Of Papers Of The American Chemical Society

Thompson D, Miller C, McCarthy FO (2008) Computer simulations reveal a novel nucleotide-type binding orientation for ellipticine-based anticancer c-kit kinase inhibitors.. Biochemistry :10333-10344

Cieplak, Marek and Thompson, Damien (2008) Coarse-grained molecular dynamics simulations of nanopatterning with multivalent inks. The Journal of Chemical Physics

Thompson D (2008) The effective concentration of unbound ink anchors at the molecular printboard.. The journal of physical chemistry. B :4994-4999

Cieplak, Marek;Thompson, Damien; (2008) Coarse-grained molecular dynamics simulations of nanopatterning with multivalent inks. Chemical Physics

Gannon G, Larsson JA, Greer JC, Thompson D (2008) Guanidinium chloride molecular diffusion in aqueous and mixed water-ethanol solutions.. The journal of physical chemistry. B :8906-8911

Thompson, Damien,Miller, Charlotte,McCarthy, Florence O. (2008) Computer Simulations Reveal a Novel Nucleotide-Type Binding Orientation for Ellipticine-Based Anticancer c-kit Kinase Inhibitors†. : American Chemical Society Biochemistry :10333-10344

Thompson D, Lazennec C, Plateau P, Simonson T (2008) Probing electrostatic interactions and ligand binding in aspartyl-tRNA synthetase through site-directed mutagenesis and computer simulations.. Proteins-Structure Function And Bioinformatics :1450-1460

Thompson, D; Hodnett, BK (2008) Hydrocarbon Selective Oxidation on Vanadium Phosphorus Oxide Catalysts: Insights from Electronic Structure Calculations. Topics In Catalysis :116-123

Thompson, D. (2008) The Effective Concentration of Unbound Ink Anchors at the Molecular Printboard. : American Chemical Society The Journal of Physical Chemistry B :4994-4999

Thompson D (2007) In silico engineering of tailored ink-binding ability at molecular printboards.. Chemphyschem :1684-1693

Thompson D (2007) Free energy balance predicates dendrimer binding multivalency at molecular printboards.. Langmuir :8441-8451

Thompson D, Lazennec C, Plateau P, Simonson T (2007) Ammonium scanning in an enzyme active site. The chiral specificity of aspartyl-tRNA synthetase.. The Journal of biological chemistry :30856-30868

Thompson D, Larsson JA (2006) Modeling competitive guest binding to beta-cyclodextrin molecular printboards.. The journal of physical chemistry. B :16640-16645

Thompson D, Plateau P, Simonson T (2006) Free-energy simulations and experiments reveal long-range electrostatic interactions and substrate-assisted specificity in an aminoacyl-tRNA synthetase.. Chembiochem :337-344

Thompson D, Simonson T (2006) Molecular dynamics simulations show that bound Mg2+ contributes to amino acid and aminoacyl adenylate binding specificity in aspartyl-tRNA synthetase through long range electrostatic interactions.. The Journal of biological chemistry :23792-23803

Thompson, D.J,Ciobı̂cǎ, I.M,Hodnett, B.K,van Santen, R.A,Fanning, M.O (2004) Electronic structure of the extended vanadyl pyrophosphate (1&#xa0;0&#xa0;0) surface. Catalysis Today :177-180

Thompson, D.J,Ciobı̂că, I.M,Hodnett, B.K,van Santen, R.A,Fanning, M.O (2003) A DFT periodic study of the vanadyl pyrophosphate (1&#xa0;0&#xa0;0) surface. Surface Science :438-451

Thompson, D.J,Fanning, M.O,Hodnett, B.K (2003) The interplay of electrostatic and covalent effects in 1-butene oxidation over vanadyl pyrophosphate. Journal of Molecular Catalysis A: Chemical :435-439

Thompson, D.J.,Fanning, M.O.,Hodnett, B.K. (2003) Modelling the active sites in vanadyl pyrophosphate. Journal of Molecular Catalysis A: Chemical :125-137

Thompson D.;Fanning M.;Hodnett B. (2003) Modelling the active sites in vanadyl pyrophosphate. Journal Of Molecular Catalysis A-Chemical :125-137