Dr. James Brown
Biography
I was educated in Australia, receiving my BSc, MSc and PhD from the Queensland University of Technology, with my doctoral work undertaken at the Queensland Institute of Medical Research (QIMR). I received postdoctoral training at the National University of Ireland, where I became a faculty member. I then joined the Biological Sciences Department at the University of Limerick as a Lecturer in Cell Biology and Cancer, where I currently lead my Oncobiology and Molecular Therapeutics Group. Additionally, I have an MA (in Academic Practice) and a MSc Business (in Leadership Development), with publications in each of these fields.My groups translational work focuses on validating our small molecule lysine acetylation inhibitors (KATi) targeting Tip60. Investigating and validating new breast cancer biomarkers, allows improved patient stratification and enriched understanding of tumour (and subtype specific), molecular changes. Our fundamental research focus is using KATi to revealing the molecular mechanisms (underpinning breast cancer) regulated by acetyltransferases (Tip60 centric) in genome protection and epigenetic modifications. I have a strong research record and I was awarded the prestigious European Association for Cancer Research award (2015) by the Irish association for Cancer Research (IACR), an award for an outstanding young individual based scientific track record, and for my developing a novel compound that preferentially targets breast cancer (Gao et al, Sci Rep. 2014). I have guided my postgraduate students (PhD, MD) to achieve multiple publications, and they have won a number of awards and grants.I served on the IACR Senior Council (2017-2020), previously serving at the first Chair of the IACR Junior Council. I am co-Chair of our Bronze awarded (2021) Athena Swan Departmental Self-Assessment Committee. I sit on the Limerick Cancer Research Centre (LCRC) Development Committee and serve as the Cancer Genome theme leader for University of Limerick Cancer Centre (ULCaN). I am an academic editor for PLOS One, BAMBEd and lead editor a special issue for Frontiers in Cell Biology (Mechanisms Guarding the Genome).Research Interests
The focus of my Oncobiology and Molecular Therapeutics Group is exploring the creation and development of the next generation of targeted cancer research therapeutics, breast cancer biomarker discovery, and dysregulation of genome stability mechanisms in cancer. My group's fundamental research explores new roles for lysine acetyltransferase Tip60 dependent signalling (focusing on the DNA double strand break response). Our translational projects focus on pre-clinical validation of the in vivo mechanisms of action of our targeted Tip60 inhibitor, and the discovery and validation of breast cancer biomarkers (including the use of AI-based analysis and AI-driven digital pathology).Peer Reviewed Journals
Editorial: Cancer Therapeutics: Targeting DNA Repair Pathways
(2022) Editorial: Cancer Therapeutics: Targeting DNA Repair Pathways. Frontiers In Molecular Biosciences
Editorial: Mechanisms guarding the genome
J.A.L. Brown; (2022) Editorial: Mechanisms guarding the genome. Frontiers In Cell And Developmental Biology
âCentrosome Amplification promotes cell invasion via cell-cell contact disruption and Rap-1 activationâ
Anu Prakash;Shishir Paunikar;Mark Webber;Emma McDermott;Sri H. Vellanki;Kerry Thompson;Peter Dockery;Hanne Jahns;James A.L. Brown;Ann M. Hopkins;Emer Bourke; (2022) âCentrosome Amplification promotes cell invasion via cell-cell contact disruption and Rap-1 activationâ.
Peripheral Blood Cell Ratios as Prognostic Indicators in a Neoadjuvant Chemotherapy-Treated Breast Cancer Cohort
Jalali A.;Miresse D.;Fahey M.R.;Ni Mhaonaigh N.;McGuire A.;Bourke E.;Kerin M.J.;Brown J.A.L. (2022) Peripheral Blood Cell Ratios as Prognostic Indicators in a Neoadjuvant Chemotherapy-Treated Breast Cancer Cohort. Current Oncology :7512-7523
A Novel Mechanism of Ataxia Telangiectasia Mutated Mediated Regulation of Chromatin Remodeling in Hypoxic Conditions
Likhatcheva, M;Gieling, RG;Brown, JAL;Demonacos, C;Williams, KJ (2021) A Novel Mechanism of Ataxia Telangiectasia Mutated Mediated Regulation of Chromatin Remodeling in Hypoxic Conditions. LAUSANNE : FRONTIERS MEDIA SA Frontiers In Cell And Developmental Biology
Recent Advances in the Role of Discoidin Domain Receptor Tyrosine Kinase 1 and Discoidin Domain Receptor Tyrosine Kinase 2 in Breast and Ovarian Cancer.
Chen L;Kong X;Fang Y;Paunikar S;Wang X;Brown JAL;Bourke E;Li X;Wang J; (2021) Recent Advances in the Role of Discoidin Domain Receptor Tyrosine Kinase 1 and Discoidin Domain Receptor Tyrosine Kinase 2 in Breast and Ovarian Cancer.. Frontiers In Cell And Developmental Biology
Prospective assessment of systemic microRNAs as markers of response to neoadjuvant chemotherapy in breast cancer
McGuire A.;Casey M.C.;Waldron R.M.;Heneghan H.;Kalinina O.;Holian E.;McDermott A.;Lowery A.J.;Newell J.;Dwyer R.M.;Miller N.;Keane M.;Brown J.A.L.;Kerin M.J. (2020) Prospective assessment of systemic microRNAs as markers of response to neoadjuvant chemotherapy in breast cancer. Cancers :1-12
Patent spotlight: small-molecule lysine acetyltransferase inhibitors (KATi).
Brown JA; (2020) Patent spotlight: small-molecule lysine acetyltransferase inhibitors (KATi).. Pharmaceutical Patent Analyst
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
(2019) Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Data Base
Quantifying Tip60 (Kat5) stratifies breast cancer.
McGuire A and Casey MC and Shalaby A and Kalinina O and Curran C and Webber M and Callagy G and Holian E and Bourke E and Kerin MJ and Brown JAL (2019) Quantifying Tip60 (Kat5) stratifies breast cancer.. Scientific reports
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
J.A.L. Brown (2019) Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database
Recent Advances in Understanding FOXN3 in Breast Cancer, and Other Malignancies
J.A.L. Brown (2019) Recent Advances in Understanding FOXN3 in Breast Cancer, and Other Malignancies. Frontiers in Oncology
Circulating microRNAs miR-331 and miR-195 differentiate local luminal a from metastatic breast cancer
Peter McAnena and Kahraman Tanriverdi and Catherine Curran and K. Gilligan and Jane E. Freedman and James A. L. Brown and Michael J. Kerin (2019) Circulating microRNAs miR-331 and miR-195 differentiate local luminal a from metastatic breast cancer. BMC Cancer
Impact of concurrent thyroid pathology on surgical intervention for primary hyperparathyroidism.
(2019) Impact of concurrent thyroid pathology on surgical intervention for primary hyperparathyroidism.. J Endocrine Disorders & Surgery
Quantifying Argonaute 2 (Ago2) expression to stratify breast cancer.
Casey MC;Prakash A;Holian E;McGuire A;Kalinina O;Shalaby A;Curran C;Webber M;Callagy G;Bourke E;Kerin MJ;Brown JA; (2019) Quantifying Argonaute 2 (Ago2) expression to stratify breast cancer.. Bmc Cancer
Producing scientific posters, using online scientific resources, improves applied scientific skills in undergraduates
James A.L. Brown (2018) Producing scientific posters, using online scientific resources, improves applied scientific skills in undergraduates. Journal of Biological Education :1-11
Clinically Applicable Inhibitors Impacting Genome Stability
J.A.L. Brown and Anu Prakash and Juan Garcia-Moreno and James Brown and Emer Bourke (2018) Clinically Applicable Inhibitors Impacting Genome Stability. Molecules
Precision oncology â' advancing personalised cancer medicine
(2018) Precision oncology â' advancing personalised cancer medicine. Cancer Professional
Correction to: Breast cancer subtype discordance: impact on post-recurrence survival and potential treatment options.
(2018) Correction to: Breast cancer subtype discordance: impact on post-recurrence survival and potential treatment options.. Bmc Cancer
Breast cancer subtype discordance: impact on post-recurrence survival and potential treatment options.
McAnena PF and Brown JA and Ramli A and Curran C and Malone C and McLaughlin R and Barry K and Jal B and Kerin MJ (2018) Breast cancer subtype discordance: impact on post-recurrence survival and potential treatment options.. BMC cancer
Practical Bioinformatics Analysis of MiRNA Data Using Online Tools.
Brown JA;Bourke E; (2017) Practical Bioinformatics Analysis of MiRNA Data Using Online Tools..
To assess the ability of pre-operative NLR scores to predict response to neo-adjuvant chemotherapy in breast cancer
(2017) To assess the ability of pre-operative NLR scores to predict response to neo-adjuvant chemotherapy in breast cancer. Irish Journal Of Medical Science (1971 -)
In Vitro Histone Acetylation Assay.
Brown JAL; (2017) In Vitro Histone Acetylation Assay.. Current Protocols In Pharmacology
Differential impact of hormone receptor status on survival and recurrence for HER2 receptor-positive breast cancers treated with Trastuzumab
Andrew McGuire and Olga Kalinina and Emma Holian and Catherine Curran and Carmel A. Malone and Ray McLaughlin and Aoife Lowery and James A. L. Brown and Michael J. Kerin (2017) Differential impact of hormone receptor status on survival and recurrence for HER2 receptor-positive breast cancers treated with Trastuzumab. Breast Cancer Research and Treatment
Practical Bioinformatics Analysis of MiRNA Data Using Online Tools.
Brown JA;Bourke E; (2017) Practical Bioinformatics Analysis of MiRNA Data Using Online Tools.. Methods in molecular biology (Clifton, N.J.)
Advances in Precision Medicine: Tailoring Individualized Therapies.
;;;; (2017) Advances in Precision Medicine: Tailoring Individualized Therapies.. Cancers
Circulating Nucleosomes and Nucleosome Modifications as Biomarkers in Cancer
Peter McAnena and James Brown and Michael Kerin (2017) Circulating Nucleosomes and Nucleosome Modifications as Biomarkers in Cancer. Cancers :5-
Screening of exosomal microRNAs from colorectal cancer cells.
J.A.L. Brown (2016) Screening of exosomal microRNAs from colorectal cancer cells.. Cancer Biomarkers
Evaluating the effectiveness of a practical inquiry-based learning bioinformatics module on undergraduate student engagement and applied skills
J.A.L. Brown (2016) Evaluating the effectiveness of a practical inquiry-based learning bioinformatics module on undergraduate student engagement and applied skills. Biochemistry and Molecular Biology Education
Exploring circulating microRNA in the Neoadjuvant Treatment of Breast Cancer
J.A.L. Brown (2016) Exploring circulating microRNA in the Neoadjuvant Treatment of Breast Cancer. International Journal of Cancer
Targeting cancer using KAT inhibitors to mimic lethal knockouts
Brown, J.A.L.;Bourke, E.;Eriksson, L.A.;Kerin, M.J.; (2016) Targeting cancer using KAT inhibitors to mimic lethal knockouts. Biochemical Society Transactions
Targeting cancer using KAT inhibitors to mimic lethal knockouts.
Brown JA;Bourke E;Eriksson LA;Kerin MJ; (2016) Targeting cancer using KAT inhibitors to mimic lethal knockouts..
Big Data- Led Cancer Research, Application, and Insights
J.A.L. Brown (2016) Big Data- Led Cancer Research, Application, and Insights. Cancer Research
Metastatic breast cancer: the potential of miRNA for diagnosis and treatment monitoring
McGuire, A.;Brown, J.A.L.;Kerin, M.J.; (2015) Metastatic breast cancer: the potential of miRNA for diagnosis and treatment monitoring. Cancer And Metastasis Reviews
Evolution of a research field- a micro (RNA) example.
J.A.L. Brown (2015) Evolution of a research field- a micro (RNA) example.. PeerJ
Evolution of a research field- a micro (RNA) example.
(2015) Evolution of a research field- a micro (RNA) example.. Peerj
Metastatic breast cancer: the potential of miRNA for diagnosis and treatment monitoring.
J.A.L. Brown (2015) Metastatic breast cancer: the potential of miRNA for diagnosis and treatment monitoring.. Cancer Metastasis Rev.
Effects of age on the detection and management of breast cancer.
McGuire A;Brown JA;Malone C;McLaughlin R;Kerin MJ; (2015) Effects of age on the detection and management of breast cancer..
Evolution of a research field-a micro (RNA) example
Casey, M.-C.;Kerin, M.J.;Brown, J.A.;Sweeney, K.J.; (2015) Evolution of a research field-a micro (RNA) example. Peerj
Metastatic breast cancer: the potential of miRNA for diagnosis and treatment monitoring.
(2015) Metastatic breast cancer: the potential of miRNA for diagnosis and treatment monitoring.. Cancer Metastasis Rev.
ROCK activity and the Gβγ complex mediate chemotactic migration of mouse bone marrow-derived stromal cells.
Ryan CM;Brown JA;Bourke E;Prendergast ÃM;Kavanagh C;Liu Z;Owens P;Shaw G;Kolch W;O'Brien T;Barry FP; (2015) ROCK activity and the Gβγ complex mediate chemotactic migration of mouse bone marrow-derived stromal cells..
Primary cilium-associated genes mediate bone marrow-derived mesenchymal stem cell response to hypoxia.
J.A. Brown; (2014) Primary cilium-associated genes mediate bone marrow-derived mesenchymal stem cell response to hypoxia.. Stem Cell Research
Primary cilium-associated genes mediate bone marrow stromal cell response to hypoxia
J.A.L. Brown (2014) Primary cilium-associated genes mediate bone marrow stromal cell response to hypoxia. Stem Cell Research
Rational design and validation of a Tip60 histone acetyltransferase inhibitor
Chunxia Gao and Emer Bourke and Martin Scobie and Melina Arcos Famme and Tobias Koolmeister and Thomas Helleday and Leif A. Eriksson and Noel F. Lowndes and James A. L. Brown (2014) Rational design and validation of a Tip60 histone acetyltransferase inhibitor. Scientific Reports
Rational design and validation of an inhibitor of the histone acetyltransferase Tip60.
(2014) Rational design and validation of an inhibitor of the histone acetyltransferase Tip60.. Scientific Reports
Primary cilium-associated genes mediate bone marrow-derived mesenchymal stem cell response to hypoxia.
J.A.L. Brown and J.A. Brown (2014) Primary cilium-associated genes mediate bone marrow-derived mesenchymal stem cell response to hypoxia.. Stem Cell Research
F1000Prime Recommendation
Frank Barry;J.A.L. Brown; (2014) F1000Prime Recommendation.
Rational design and validation of an inhibitor of the histone acetyltransferase Tip60.
J.A.L. Brown and J.A. Brown (2014) Rational design and validation of an inhibitor of the histone acetyltransferase Tip60.. Scientific Reports
Multiple facets of the DNA damage response contribute to the radioresistance of mouse mesenchymal stromal cell lines.
Sugrue T;Brown JA;Lowndes NF;Ceredig R; (2013) Multiple facets of the DNA damage response contribute to the radioresistance of mouse mesenchymal stromal cell lines.. Stem Cells
Smg1 haploinsufficiency predisposes to tumor formation and inflammation.
Roberts TL;Ho U;Luff J;Lee CS;Apte SH;MacDonald KP;Raggat LJ;Pettit AR;Morrow CA;Waters MJ;Chen P;Woods RG;Thomas GP;St Pierre L;Farah CS;Clarke RA;Brown JA;Lavin MF; (2013) Smg1 haploinsufficiency predisposes to tumor formation and inflammation.. Proceedings of the National Academy of Sciences of the United States of America
Co-mutation of histone H2AX S139A with Y142A rescues Y142A-induced ionising radiation sensitivity.
Brown JA;Eykelenboom JK;Lowndes NF; (2012) Co-mutation of histone H2AX S139A with Y142A rescues Y142A-induced ionising radiation sensitivity.. Febs Open Bio
A novel role for hSMG-1 in stress granule formation.
Brown JA;Roberts TL;Richards R;Woods R;Birrell G;Lim YC;Ohno S;Yamashita A;Abraham RT;Gueven N;Lavin MF; (2011) A novel role for hSMG-1 in stress granule formation.. Molecular and cellular biology
MCPH1/BRIT1 limits ionizing radiation-induced centrosome amplification.
Brown JA;Bourke E;Liptrot C;Dockery P;Morrison CG; (2010) MCPH1/BRIT1 limits ionizing radiation-induced centrosome amplification.. Oncogene
DNA damage induces Chk1-dependent threonine-160 phosphorylation and activation of Cdk2.
Bourke E;Brown JA;Takeda S;Hochegger H;Morrison CG; (2010) DNA damage induces Chk1-dependent threonine-160 phosphorylation and activation of Cdk2.. Oncogene
Books
Cancer Therapeutics: Targeting DNA Repair Pathways.
Suraweera, A., Brown, J. A. L., Lavin, M. F., Lim, Y. C., (2022) Cancer Therapeutics: Targeting DNA Repair Pathways.. Lausanne : Frontiers Media SA
Book Chapters
Chapter 10: Advances in Precision Medicine: Tailoring Individualized Therapies.
KB Matchett, N Lynam-Lennon, R.W.G Watson, JAL Brown (2020) Chapter 10: Advances in Precision Medicine: Tailoring Individualized Therapies.. Singapore : Pan Stanford he Road from Nanomedicine to Precision Medicine
Practical bioinformatics analysis of MiRNA data using online tools
Brown, J.A.L.;Bourke, E.; (2017) Practical bioinformatics analysis of MiRNA data using online tools. Methods in Molecular Biology
Edited Books
Other Journals
Impact of concurrent thyroid pathology on surgical intervention for primary hyperparathyroidism.
Casey MC, Mozo M, McVeigh TP, Quill DS, Brown J, Kerin MJ, Lowery AJ. (2019) Impact of concurrent thyroid pathology on surgical intervention for primary hyperparathyroidism. . . : Pulsus Journals J Endocrine Disorders & Surgery :1-5
Conference Publications
Sir Peter Freyer Surgical Symposium
A McGuire, A Haris, C Curran, JAL Brown, MJ Kerin. (2017) Sir Peter Freyer Surgical Symposium .
Sir Peter Freyer Surgical Symposium
MC Casey, H Zafar, R Ennis, S Walsh, J Brown, C Malone, R McLaughlin, Kerin MJ, Dwyer R. (2015) Sir Peter Freyer Surgical Symposium.
Irish Journal of Medical Science (1971 -)
(2015) Irish Journal of Medical Science (1971 -). Irish Journal Of Medical Science (1971 -)
Thirty-Seventh Annual CTRC-AACR San Antonio Breast Cancer Symposium; December 9-13, 2014; San Antonio, TX
DP Joyce, CL Glynn, J Brown, E Holian, P Dockery, MJ Kerin, RM Dwyer (2015) Thirty-Seventh Annual CTRC-AACR San Antonio Breast Cancer Symposium; December 9-13, 2014; San Antonio, TX.
The Society of Academic and Research Surgery
M Casey, R Ennis, S Walsh, J Brown, R Dwyer, M Leahy, M Kerin. (2015) The Society of Academic and Research Surgery .
NAIRTL 5th Annual Conference proceedings.
A Gorman, M Grenon, J Brown, H Dodson, A Flaus. (2011) NAIRTL 5th Annual Conference proceedings. .
Conference Contributions
Abstract P4-07-05: Exosome-mediated trafficking of microRNAs by breast cancer cells
(2015) Abstract P4-07-05: Exosome-mediated trafficking of microRNAs by breast cancer cells. Poster Session Abstracts
Potential role of photoacoustic imaging in neoadjuvant chemotherapy response monitoring in breast cancer
(2015) Potential role of photoacoustic imaging in neoadjuvant chemotherapy response monitoring in breast cancer. The British journal of surgery
Posters as student engagement approach in first year science
(2011) Posters as student engagement approach in first year science. NAIRTL 5th Annual Conference
Published Reports
Editorials
Editorial: Mechanisms guarding the genome
Brown J.A.L.;Bourke E.;Hancock W.W.;Richard D.J. (2022) Editorial: Mechanisms guarding the genome. Frontiers In Cell And Developmental Biology
Editorial: Cancer Therapeutics: Targeting DNA Repair Pathways
Suraweera, A;Brown, JAL;Lim, YC;Lavin, MF (2022) Editorial: Cancer Therapeutics: Targeting DNA Repair Pathways. LAUSANNE : FRONTIERS MEDIA SA FRONTIERS IN MOLECULAR BIOSCIENCES
Book Reviews
Other Publications
Editorial: Mechanisms guarding the genome
Brown J.A.L.;Bourke E.;Hancock W.W.;Richard D.J. (2022) Editorial: Mechanisms guarding the genome. Frontiers In Cell And Developmental Biology
Editorial: Cancer Therapeutics: Targeting DNA Repair Pathways
Suraweera, A;Brown, JAL;Lim, YC;Lavin, MF (2022) Editorial: Cancer Therapeutics: Targeting DNA Repair Pathways. LAUSANNE : FRONTIERS MEDIA SA FRONTIERS IN MOLECULAR BIOSCIENCES
Precision oncology- advancing personalised cancer medicine
J.A.L. Brown (2018) Precision oncology- advancing personalised cancer medicine.
F1000Prime Recommendation
Frank Barry;J.A.L. Brown; (2014) F1000Prime Recommendation.
F1000Prime Recommendation
Frank Barry;J.A.L. Brown; (2014) F1000Prime Recommendation.
F1000Prime Recommendation
Frank Barry;J.A.L. Brown; (2013) F1000Prime Recommendation.